I can't give you full instructions right now, but the best basic idea is to change the interaction of Apache with Tomcat through mod_jk.
Currently our installation sets up mod_jk to forward requests to all Scalix URLs (i.e. /webmail, /sac, /res, /caa and /webcal) to tomcat, independent on how they come in.
As SSL port :443 is a separate virtual host from Apache's point of view, the configuration can be moved from a global config to a per-host configuration.
Note that you will need to keep at least /caa and /res open for http, otherwise Scalix Admin Console will stop to function.
Hope this helps for an idea - maybe there is a Apache czar out here that can quickly hack together config file samples; every time I have to configure apache, I really envy it's flexibility but somehow drown in the possibilities.....
cheers,
Florian.