All webapps have a corresponding log4j.properties file. Beside "nulling" the log as mentioned it might be a good idea to prevent the files from growing to the described size.
Theres no documentation provided by Scalix for the log4j settings because its taken from http://logging.apache.org/log4j/.
SIS log config is in /var/opt/scalix/??/sis/log4j.properties
If you change
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log4j.logger.indexer=INFO, indexfile
to
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log4j.logger.indexer=INFO, indexrfile
and
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log4j.appender.indexrfile.MaxFileSize=100KB
to
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log4j.appender.indexrfile.MaxFileSize=100MB
you will get up to 2 indexer logs with a max of 100MB
[EDIT: typo fixed]